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NETTAB Program
Detailed Program
NETTAB 2006 Workshop: Distributed Applications, Web Services, Tools andGRID Infrastructures for Bioinformatics
Held at Is Morus Relais, S. Margherita di Pula (CA) and POLARIS Science and Technology Park of Sardinia, Pula (CA), July 10-13th, 2006
http://www.nettab.org/2006/
Monday, July 10, 2006 (at Is Morus Relais)
10.00-13.00 Registration and poster hang up
13.00-14.00 Lunch
14.00-14.40 Opening lecture
BIOINFOGRID: Bioinformatics GRID based applications overview
Luciano Milanesi, Institute of Biomedical Technology CNR-ITB, Milan, Italy
14.40-15.20 Invited lecture
ICT technologies involved with GRID infrastructures
G. P. Maggi, INFN, Bari, Italy
15.20-15.40 Coffee break
15.40-17.00 1st Session
GRID infrastructures for bioinformatics
Replication and Update of Molecular Biology Databases in a Grid Environment
J. Salzemann, N. Jacq, G. Le Mahec, and V. Breton
A Grid infrastructure for managing workflows in bioinformatics applications
A. Falzone, M. Melato, I. Porro, S. Ratto, A. Schenone, and L. Torterolo
A GRID-based multilayer architecture for bioinformatics
E. Bartocci, D. Cacciagrano, N. Cannata, F. Corradini, E. Merelli, L. Milanesi, and P. Romano
A Service-oriented Grid Infrastructure for Biomedical Data and Compute Services
T. Arbona, S. Benkner, J. Fingberg, G. Engelbrecht, M. Hofmann, K. Kumpf, G. Lonsdale and A. Wöhrer
Tuesday, July 11, 2006 (at Is Morus Relais)
09.00-09.40 Invited lecture
Setting up a Bioinformatics service Center in a distributed environment
Patricia Rodriguez-Tomé, CRS4 Bioinformatics, Cagliari, Italy
09.40-10.40 2nd Session
Web Services, Software Agents, and Ontologies
Modeling gene expression data via positive Boolean functions
F. Ruffino, M. Muselli, and G. Valentini
Unsupervised Method as a Quality Control Tool Improves the Microarray Analysis of Brain Gene Expression in Alcohol Research
A. Lourdusamy, M. Ubaldi, L. Soverchia, R. Ciccocioppo, and E. Merelli
10.40-13.00 Coffee break and poster session
13.00-14.00 Lunch
14.00-15.20 3rd Session
Web Services, Software Agents, and Ontologies (cont.d)
Extraction of functionally similar bioinformatics workflows
J. Seo, S. Senoo, Y. Takenaka, H. Matsuda
A MultiAgent System for Retrieving Bioinformatics Publications from Web Sources
A. Addis, A. Manconi, M. Saba, and E. Vargiu
Pathway Assistant: a web portal for metabolic modelling
P. Parikka, E. Pitkänen, A. Rantanen, A. Åkerlund, and E. Ukkonen
15.20-15.40 Coffee break
15.40-16.20 Invited lecture
The EELA project: Biomedical Applications
Rafael Mayo Garcia, CIEMAT, Madrid, Spain
16.20-17.00 4th Session
GRID applications and perspectives in genomics and proteomics
Microarray data infrastructure using GebbaLab
A. Emerson, G. Fiameni, S. Giuliani, E. Rossi, and S. Volinia
A GRID approach for finding functional analogous gene products
G. Donvito, A. Tulipano, G. P. Maggi, and A. Gisel
20.00-22.00 Social dinner at "I giardini di Alice"
Wednesday, July 12, 2006 (at Is Morus Relais)
09.00-09.40 Invited lecture
Grid-enabled life science applications: status and perspectives
Vincent Breton, CNRS – IN2P3, Clermont-Ferrand, France
09.40-10.40 5th Session
GRID applications and perspectives in biomedical informatics
Clinical-Genomics data modelling using HL7 standards in GebbaLab project
S. D’Ascia and G. Frangiamone
A Grid Approach for Large Data Processing in Biomedicine
M. Fato, A. Papadimitropoulos, I. Porro, S. Scaglione, A. Schenone, L. Torterolo and F. Viti
ImmunoGrid - The virtual human immune system project
A. Emerson and E. Rossi
10.40-11.20 Invited lecture
Grid-enabled Hight Throughput in-silico Screening Against Influenza A Neuraminidase.
Hurng-Chun Lee, Academia Sinica, Taipei, Taiwan
11.20-11.40 Coffee break
11.40-13.00 Final Session
Perspectives of GRID applications in biomedical research
Panel discussion with all invited speakers
Presentation of NETTAB 2007 Workshop
P. Romano, Bioinformatics and Structural Proteomics National Cancer Research Institute (IST), Italy
The SeaLife project
A. Burger, Heriot-Watt University, Edinburgh, Scotland, United Kingdom
Farewell
13.00-14.00 Lunch
14.30-18.30 Boat tour
Thursday, July 13, 2006 (at POLARIS Science and Technology Park of Sardinia)
09.30-11.20
Tutorial 1A
bioMOBY concept, architecture, central repository and related tools
Martin Senger, IRRI, Manila, Philippines
Tutorial 1B
GRID Tools and infrastructures
Giuseppe La Rocca, INFN Catania, Italy
Giacinto Donvito and Giorgio P. Maggi, INFN Bari, Italy
11.20-11.40 Coffee break
11.40-13.30
Tutorial 2A
Agents in bioGRID computing
Emanuela Merelli, DMI, University of Camerino, Italy
Tutorial 2B
GRID Tools and infrastructures
Giuseppe La Rocca, INFN Catania, Italy
Giacinto Donvito and Giorgio P. Maggi, INFN Bari, Italy
13.30-14.30 Lunch
14.30-15.15
Meeting with representatives of research groups of POLARIS Science and Technology Park of Sardinia
15.15-15.30 Coffee break
15.30-17.20
Tutorial 3A
New bioinformatics applications based on Web Services technologies and GRID computing
Tiziana Castrignanò, CASPUR, Rome, Italy
Tutorial 3B
HPC infrastructures
Claudio Arlandini, Raffaele Ponzini, CILEA, segrate, Italy and
Matteo Vit, Pierfrancesco Zuccato, Exadron-Eurotech, Amaro, Italy and
Moreno Baricevic, Cnr - INFM Democritos, Trieste, Italy
BioinfoGRID White Paper now available for download
